In terms of infrastructure, probably Tarkin. Militarily, there is no replacement for someone like Thrawn.
However, in both continuities (that is, Canon and Legends) Sidious has the secret plan to replace his mostly mundane and technologically oriented Empire with a more Force-focused one (in Canon, the Final Order and in Legends, the Dark Empire). I think that this clearly paints the picture of Vader being far more important to Palpatine’s long term plans for the Empire than either Thrawn or Tarkin could ever hope to be.